3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14305

Details:

PFam ID : PF14305

PFam Domain Description : TupA-like ATPgrasp

Number of Sequence in 50% Dataset : 114

Number of Sequence in Full Dataset : 204

Average sequence length: 227.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14305	A7AKG7_9PORP_1_54	92.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14305	B3EK28_CHLPB_13_276	100

Sequence based PCA Plot of the family - PF14305 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=178 Length=8
Motif2 Start=120 Length=8
Motif3 Start=236 Length=8
Motif4 Start=221 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay