3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14304

Details:

PFam ID : PF14304

PFam Domain Description : Transcription termination and cleavage factor C-terminal

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 93

Average sequence length: 42.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14304	A8N3X3_COPC7_228_261	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14304	Q6C6I9_YARLI_208_253	100

Sequence based PCA Plot of the family - PF14304 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay