3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14303

Details:

PFam ID : PF14303

PFam Domain Description : No apical meristem-associated C-terminal domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 271

Average sequence length: 141.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14303	B8B348_ORYSI_264_298	95.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14303	F0W6M0_9STRA_6_138	100

Sequence based PCA Plot of the family - PF14303 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=138 Length=8
Motif2 Start=59 Length=8
Motif3 Start=2 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay