3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14302

Details:

PFam ID : PF14302

PFam Domain Description : Domain of unknown function (DUF4377)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 114

Average sequence length: 79.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14302	D4IN33_9BACT_125_200	59.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14302	E6SN69_BACT6_41_131	100

Sequence based PCA Plot of the family - PF14302 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay