3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14301

Details:

PFam ID : PF14301

PFam Domain Description : Domain of unknown function (DUF4376)

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 138

Average sequence length: 103.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14301	C4TZJ7_YERKR_1_77	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14301	E9RJJ1_BACNA_46_157	99.2

Sequence based PCA Plot of the family - PF14301 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay