3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14298

Details:

PFam ID : PF14298

PFam Domain Description : Domain of unknown function (DUF4374)

Number of Sequence in 50% Dataset : 25

Number of Sequence in Full Dataset : 55

Average sequence length: 241.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14298	Q1N1B0_9GAMM_189_412	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14298	C7M7M1_CAPOD_24_233	98.1

Sequence based PCA Plot of the family - PF14298 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=223 Length=8
Motif2 Start=268 Length=8
Motif3 Start=297 Length=8
Motif4 Start=310 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay