3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14296

Details:

PFam ID : PF14296

PFam Domain Description : O-antigen polysaccharide polymerase Wzy

Number of Sequence in 50% Dataset : 101

Number of Sequence in Full Dataset : 117

Average sequence length: 376.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14296	C3QYU9_9BACE_9_453	88

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14296	B6FJ85_9CLOT_27_481	100

Sequence based PCA Plot of the family - PF14296 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=355 Length=8
Motif4 Start=368 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay