3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14288

Details:

PFam ID : PF14288

PFam Domain Description : Flagellar filament outer layer protein Flaa

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 195

Average sequence length: 105.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14288	Q015K3_OSTTA_2563_2682	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14288	Q015K3_OSTTA_2563_2682	100

Sequence based PCA Plot of the family - PF14288 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=111 Length=8
Motif2 Start=21 Length=11
Motif3 Start=97 Length=11
Motif4 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay