3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14280

Details:

PFam ID : PF14280

PFam Domain Description : Domain of unknown function (DUF4365)

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 139

Average sequence length: 140.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14280	A3ZSB4_9PLAN_1_112	93.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14280	B3Q0I2_RHIE6_20_185	100

Sequence based PCA Plot of the family - PF14280 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=23 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay