3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14278

Details:

PFam ID : PF14278

PFam Domain Description : Transcriptional regulator C-terminal region

Number of Sequence in 50% Dataset : 192

Number of Sequence in Full Dataset : 341

Average sequence length: 97.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14278	D0KQ52_SULS9_50_129	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14278	E7GYA3_STRAP_51_158	98.8

Sequence based PCA Plot of the family - PF14278 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay