3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14277

Details:

PFam ID : PF14277

PFam Domain Description : Domain of unknown function (DUF4364)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 101

Average sequence length: 155.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14277	D0KQ52_SULS9_50_129	88.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14277	E3GM41_EUBLK_10_173	98

Sequence based PCA Plot of the family - PF14277 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=2 Length=8
Motif3 Start=140 Length=8
Motif4 Start=30 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay