3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14273

Details:

PFam ID : PF14273

PFam Domain Description : Domain of unknown function (DUF4360)

Number of Sequence in 50% Dataset : 45

Number of Sequence in Full Dataset : 107

Average sequence length: 169.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14273	B2AZR9_PODAN_23_211	95.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14273	A4RPL7_MAGO7_52_249	100

Sequence based PCA Plot of the family - PF14273 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=136 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay