3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14272

Details:

PFam ID : PF14272

PFam Domain Description : Glycine-rich SFCGS

Number of Sequence in 50% Dataset : 2

Number of Sequence in Full Dataset : 22

Average sequence length: 109.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14272	C3ETA6_BACTK_15_124	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14272	D2U2R4_9ENTR_1_101	100

Sequence based PCA Plot of the family - PF14272 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay