3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14271

Details:

PFam ID : PF14271

PFam Domain Description : Domain of unknown function (DUF4359)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 59

Average sequence length: 103.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14271	C3ETA6_BACTK_15_124	70.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14271	B1XKA9_SYNP2_19_132	100

Sequence based PCA Plot of the family - PF14271 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=25 Length=8
Motif2 Start=16 Length=8
Motif3 Start=51 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay