3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14268

Details:

PFam ID : PF14268

PFam Domain Description : YoaP-like

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 96

Average sequence length: 43.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14268	B0NE45_EUBSP_9_39	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14268	E1RF31_METP4_218_259	91.5

Sequence based PCA Plot of the family - PF14268 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay