3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14262

Details:

PFam ID : PF14262

PFam Domain Description : Domain of unknown function (DUF4353)

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 261

Average sequence length: 193.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14262	D7GDC8_PROFC_354_571	78.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14262	C0FZU2_9FIRM_146_338	100

Sequence based PCA Plot of the family - PF14262 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=78 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay