3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14260

Details:

PFam ID : PF14260

PFam Domain Description : C4-type zinc-finger of DNA polymerase delta

Number of Sequence in 50% Dataset : 67

Number of Sequence in Full Dataset : 273

Average sequence length: 74.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14260	A7APT4_BABBO_1405_1475	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14260	A2FWK3_TRIVA_1079_1153	100

Sequence based PCA Plot of the family - PF14260 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=89 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay