3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14253

Details:

PFam ID : PF14253

PFam Domain Description : Bacteriophage abortive infection AbiH

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 157

Average sequence length: 249.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14253	D4YP35_9MICO_20_324	95.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14253	A3TKB9_9MICO_21_234	100

Sequence based PCA Plot of the family - PF14253 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=57 Length=8
Motif3 Start=42 Length=8
Motif4 Start=144 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay