3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14252

Details:

PFam ID : PF14252

PFam Domain Description : Domain of unknown function (DUF4347)

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 201

Average sequence length: 155.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14252	A3Z4U9_9SYNE_22_128	93.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14252	A0YZE2_LYNSP_9_198	100

Sequence based PCA Plot of the family - PF14252 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=2 Length=8
Motif2 Start=59 Length=8
Motif3 Start=101 Length=8
Motif4 Start=159 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay