3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14250

Details:

PFam ID : PF14250

PFam Domain Description : AbrB-like transcriptional regulator

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 88

Average sequence length: 69.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14250	A8U704_9LACT_33_320	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14250	Q31LS0_SYNE7_48_114	100

Sequence based PCA Plot of the family - PF14250 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay