3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14249

Details:

PFam ID : PF14249

PFam Domain Description : Tocopherol cyclase

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 106

Average sequence length: 262.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14249	A8U704_9LACT_33_320	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14249	D1L6R0_LINUS_1_139	100

Sequence based PCA Plot of the family - PF14249 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=110 Length=8
Motif3 Start=146 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay