3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14246

Details:

PFam ID : PF14246

PFam Domain Description : AefR-like transcriptional repressor, C-terminal region

Number of Sequence in 50% Dataset : 166

Number of Sequence in Full Dataset : 478

Average sequence length: 54.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14246	Q2RSP6_RHORT_133_187	90.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14246	Q0RMY7_FRAAA_159_218	100

Sequence based PCA Plot of the family - PF14246 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=11 Length=8
Motif3 Start=1 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay