3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14244

Details:

PFam ID : PF14244

PFam Domain Description : gag-polypeptide of LTR copia-type

Number of Sequence in 50% Dataset : 215

Number of Sequence in Full Dataset : 568

Average sequence length: 119.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14244	A5BG88_VITVI_3_158	98.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14244	A5AX53_VITVI_17_123	99.8

Sequence based PCA Plot of the family - PF14244 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay