3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14241

Details:

PFam ID : PF14241

PFam Domain Description : Domain of unknown function (DUF4341)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 421

Average sequence length: 64.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14241	A0L6N9_MAGSM_79_340	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14241	B8JE83_ANAD2_5_90	91.6

Sequence based PCA Plot of the family - PF14241 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=8 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay