3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14240

Details:

PFam ID : PF14240

PFam Domain Description : YHYH protein

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 139

Average sequence length: 169.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14240	A0L6N9_MAGSM_79_340	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14240	E7C5B1_9BACT_112_367	100

Sequence based PCA Plot of the family - PF14240 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=94 Length=8
Motif2 Start=3 Length=8
Motif3 Start=82 Length=8
Motif4 Start=31 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay