3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14237

Details:

PFam ID : PF14237

PFam Domain Description : Domain of unknown function (DUF4339)

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 326

Average sequence length: 44.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14237	B9XQ41_9BACT_8_49	89.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14237	F0YKD6_9STRA_1639_1689	100

Sequence based PCA Plot of the family - PF14237 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=12 Length=8
Motif2 Start=32 Length=14
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay