3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14236

Details:

PFam ID : PF14236

PFam Domain Description : Domain of unknown function (DUF4338)

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 92

Average sequence length: 189.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14236	D5WWC7_BACT2_10_109	69.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14236	D9WBL7_9ACTO_119_273	100

Sequence based PCA Plot of the family - PF14236 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=108 Length=8
Motif4 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay