3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14233

Details:

PFam ID : PF14233

PFam Domain Description : Domain of unknown function (DUF4335)

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 78

Average sequence length: 194.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14233	B8HS82_CYAP4_5_202	73.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14233	B8HP82_CYAP4_9_284	100

Sequence based PCA Plot of the family - PF14233 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay