3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14232

Details:

PFam ID : PF14232

PFam Domain Description : Domain of unknown function (DUF4334)

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 80

Average sequence length: 59.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14232	C7ZHT8_NECH7_24_54	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14232	E0LPL4_SPHCR_89_145	98.7

Sequence based PCA Plot of the family - PF14232 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=7 Length=8
Motif2 Start=20 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay