3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14231

Details:

PFam ID : PF14231

PFam Domain Description : GXWXG protein

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 89

Average sequence length: 57.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14231	C7ZHT8_NECH7_24_54	88.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14231	A2QKU4_ASPNC_28_87	100

Sequence based PCA Plot of the family - PF14231 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=26 Length=8
Motif2 Start=3 Length=8
Motif3 Start=17 Length=8
Motif4 Start=39 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay