3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14228

Details:

PFam ID : PF14228

PFam Domain Description : Cell morphogenesis central region

Number of Sequence in 50% Dataset : 95

Number of Sequence in Full Dataset : 330

Average sequence length: 246.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14228	E1ZR74_9CHLO_1496_1615	91.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14228	D8TTH8_VOLCA_1391_1511	81

Sequence based PCA Plot of the family - PF14228 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=41 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay