3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14225

Details:

PFam ID : PF14225

PFam Domain Description : Cell morphogenesis C-terminal

Number of Sequence in 50% Dataset : 46

Number of Sequence in Full Dataset : 120

Average sequence length: 230.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14225	A8NE44_BRUMA_1858_2013	97.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14225	Q6C7Z8_YARLI_1623_1917	100

Sequence based PCA Plot of the family - PF14225 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=196 Length=8
Motif2 Start=249 Length=8
Motif3 Start=66 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay