3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14223

Details:

PFam ID : PF14223

PFam Domain Description : gag-polypeptide of LTR copia-type

Number of Sequence in 50% Dataset : 166

Number of Sequence in Full Dataset : 796

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14223	Q710T7_POPDE_89_211	64.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14223	A5ANU6_VITVI_96_209	99.6

Sequence based PCA Plot of the family - PF14223 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=3 Length=27
Motif2 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay