3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14219

Details:

PFam ID : PF14219

PFam Domain Description : Domain of unknown function (DUF4328)

Number of Sequence in 50% Dataset : 78

Number of Sequence in Full Dataset : 106

Average sequence length: 161.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14219	A4EKU4_9RHOB_44_206	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14219	D2PQG6_KRIFD_69_285	100

Sequence based PCA Plot of the family - PF14219 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=70 Length=11
Motif4 Start=43 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay