3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14218

Details:

PFam ID : PF14218

PFam Domain Description : Circadian oscillating protein COP23

Number of Sequence in 50% Dataset : 41

Number of Sequence in Full Dataset : 88

Average sequence length: 145.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14218	D4TTL4_9NOST_75_220	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14218	D3ER28_UCYNA_66_234	100

Sequence based PCA Plot of the family - PF14218 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay