3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14215

Details:

PFam ID : PF14215

PFam Domain Description : bHLH-MYC and R2R3-MYB transcription factors N-terminal

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 275

Average sequence length: 155.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14215	A4RTW0_OSTLU_233_334	93.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14215	C4IZK6_MAIZE_14_135	100

Sequence based PCA Plot of the family - PF14215 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=17
Motif2 Start=1 Length=8
Motif3 Start=119 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay