3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14214

Details:

PFam ID : PF14214

PFam Domain Description : Helitron helicase-like domain at N-terminus

Number of Sequence in 50% Dataset : 87

Number of Sequence in Full Dataset : 301

Average sequence length: 150.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14214	E3MNY6_CAERE_1888_2033	73.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14214	D0P122_PHYIT_574_791	99.6

Sequence based PCA Plot of the family - PF14214 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=138 Length=8
Motif2 Start=22 Length=8
Motif3 Start=1 Length=8
Motif4 Start=208 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay