3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14213

Details:

PFam ID : PF14213

PFam Domain Description : Domain of unknown function (DUF4325)

Number of Sequence in 50% Dataset : 52

Number of Sequence in Full Dataset : 118

Average sequence length: 71.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14213	C7MM94_CRYCD_16_90	39.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14213	D7N2E9_9NEIS_17_95	100

Sequence based PCA Plot of the family - PF14213 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay