3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14206

Details:

PFam ID : PF14206

PFam Domain Description : Cysteine-rich CPCC

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 107

Average sequence length: 67.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14206	A3ZWL1_9PLAN_1_64	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14206	A6NV98_9BACE_3_81	100

Sequence based PCA Plot of the family - PF14206 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=17
Motif2 Start=1 Length=8
Motif3 Start=38 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay