3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14205

Details:

PFam ID : PF14205

PFam Domain Description : Cysteine-rich KTR

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 51

Average sequence length: 51

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14205	D7GWC8_9FIRM_38_80	75

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14205	D7GWC8_9FIRM_38_80	96

Sequence based PCA Plot of the family - PF14205 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=28 Length=11
Motif2 Start=10 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay