3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14202

Details:

PFam ID : PF14202

PFam Domain Description : Transposon-encoded protein TnpW

Number of Sequence in 50% Dataset : 8

Number of Sequence in Full Dataset : 68

Average sequence length: 36.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14202	D3APG8_9CLOT_4_68	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14202	B9Y5V1_9FIRM_27_63	100

Sequence based PCA Plot of the family - PF14202 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay