3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14199

Details:

PFam ID : PF14199

PFam Domain Description : Domain of unknown function (DUF4317)

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 102

Average sequence length: 316.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14199	A5Z4H3_9FIRM_1_397	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14199	A5Z4H3_9FIRM_1_397	100

Sequence based PCA Plot of the family - PF14199 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=380 Length=8
Motif2 Start=200 Length=8
Motif3 Start=149 Length=8
Motif4 Start=188 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay