3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14198

Details:

PFam ID : PF14198

PFam Domain Description : Transposon-encoded protein TnpV

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 172

Average sequence length: 96.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14198	E9RX55_9FIRM_12_56	20.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14198	C2CIE4_9FIRM_29_152	100

Sequence based PCA Plot of the family - PF14198 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=23 Length=8
Motif3 Start=56 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay