3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14194

Details:

PFam ID : PF14194

PFam Domain Description : Cysteine-rich VLP

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 45

Average sequence length: 53.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14194	B0P8U3_9FIRM_1_57	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14194	C0EEU7_9CLOT_1_44	100

Sequence based PCA Plot of the family - PF14194 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=13 Length=27
Motif2 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay