3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14187

Details:

PFam ID : PF14187

PFam Domain Description : Domain of unknown function (DUF4310)

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 23

Average sequence length: 190.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14187	A4SHY5_AERS4_4_207	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14187	A4SHY5_AERS4_4_207	100

Sequence based PCA Plot of the family - PF14187 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=72 Length=8
Motif2 Start=183 Length=8
Motif3 Start=83 Length=8
Motif4 Start=7 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay