3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14186

Details:

PFam ID : PF14186

PFam Domain Description : Cytoskeletal adhesion

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 29

Average sequence length: 129.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14186	E1ZHP3_9CHLO_792_947	53.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14186	D7G3L5_ECTSI_1673_1823	100

Sequence based PCA Plot of the family - PF14186 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay