3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14181

Details:

PFam ID : PF14181

PFam Domain Description : YqfQ-like protein

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 46

Average sequence length: 157

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14181	D7WQV8_9BACI_29_156	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14181	D7WQV8_9BACI_29_156	100

Sequence based PCA Plot of the family - PF14181 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=3 Length=17
Motif3 Start=81 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay