3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14180

Details:

PFam ID : PF14180

PFam Domain Description : GTP-GDP exchange factor

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 157

Average sequence length: 187.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14180	B3S3C0_TRIAD_375_513	89.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14180	D8QD18_SCHCM_685_930	100

Sequence based PCA Plot of the family - PF14180 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=231 Length=8
Motif2 Start=2 Length=8
Motif3 Start=78 Length=8
Motif4 Start=93 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay