3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14175

Details:

PFam ID : PF14175

PFam Domain Description : YaaC-like Protein

Number of Sequence in 50% Dataset : 39

Number of Sequence in Full Dataset : 57

Average sequence length: 252.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14175	B1HEK4_BURPS_2_180	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14175	C0ZH49_BREBN_5_321	100

Sequence based PCA Plot of the family - PF14175 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=18 Length=8
Motif2 Start=9 Length=8
Motif3 Start=286 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay