3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF14166

Details:

PFam ID : PF14166

PFam Domain Description : YueH-like protein

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 31

Average sequence length: 73.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14166	E6JNT0_STAEP_1_52	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF14166	Q5L1B0_GEOKA_2_80	100

Sequence based PCA Plot of the family - PF14166 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=29 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay